We've Moved! Visit our NEW FORUM to join the latest discussions. This is an archive of our previous conversations...

You can find the login page for the old forum here.
CHATPRIVACYDONATELOGINREGISTER
DMT-Nexus
FAQWIKIHEALTH & SAFETYARTATTITUDEACTIVE TOPICS
amino acid sequence for INMT Options
 
benzyme
#1 Posted : 4/20/2010 2:35:59 AM

analytical chemist

Moderator | Skills: Analytical equipment, Chemical master expertExtreme Chemical expert | Skills: Analytical equipment, Chemical master expertChemical expert | Skills: Analytical equipment, Chemical master expertSenior Member | Skills: Analytical equipment, Chemical master expert

Posts: 7463
Joined: 21-May-2008
Last visit: 03-Mar-2024
Location: the lab
>gi|66933018|ref|NP_006765.4| indolethylamine N-methyltransferase [Homo sapiens]

MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQ
VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLK
CDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE
FSCVALEKEEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCFIVARKKPGP

and sequence for the mRNA transcript for INMT

>gi|66933017|ref|NM_006774.4| Homo sapiens indolethylamine N-methyltransferase (INMT), mRNA

ACATTTCAGGGACACCATGAAGGGTGGCTTCACTGGGGGTGATGAGTACCAGAAGCACTTCCTGCCCAGG
GACTACTTGGCTACTTACTACAGCTTCGATGGCAGCCCCTCACCCGAGGCCGAGATGCTGAAGTTTAACT
TGGAATGTCTCCACAAGACCTTCGGCCCTGGAGGCCTCCAAGGGGACACGCTGATTGACATTGGCTCAGG
TCCTACCATCTACCAAGTTCTTGCTGCCTGTGATTCCTTCCAAGACATCACTCTCTCCGACTTTACCGAC
CGCAACCGGGAGGAGCTGGAAAAGTGGCTGAAGAAGGAGCCGGGGGCCTATGACTGGACCCCAGCGGTGA
AATTCGCCTGTGAGCTGGAAGGAAACAGCGGCCGATGGGAGGAGAAGGAGGAGAAGCTGCGGGCAGCGGT
GAAGCGGGTGCTCAAGTGCGATGTCCACCTGGGCAACCCGCTGGCCCCGGCTGTGTTGCCTCTCGCCGAC
TGTGTGCTCACCCTGCTGGCCATGGAGTGTGCCTGCTGTAGCCTTGATGCCTACCGCGCTGCCCTGTGCA
ACCTTGCCTCACTGCTCAAGCCGGGTGGCCACCTGGTGACCACTGTCACGCTTCGGCTCCCGTCCTACAT
GGTGGGGAAGCGTGAATTTTCCTGCGTGGCCCTGGAGAAAGAGGAGGTGGAGCAGGCTGTCCTGGATGCT
GGCTTTGACATTGAACAGCTCCTACACAGTCCCCAGAGCTACTCTGTCACCAATGCTGCCAACAATGGGG
TCTGCTTCATTGTGGCTCGCAAGAAGCCTGGGCCCTGAGCCAGGAGGGCCAGCCAGAGGTCTGGTCAGGC
TGTGAGGCCTTGGCCATCTGTATGCTAGAGAGGGGTGAGGAATGGATACTGTCTAACAGTCTCTGATTTC
AACACTAACATTCCATCTTCTGAAATTCTGAGATTCTAACATCCTTGTTTTAGAATTCTAAGTTTCCAAC
ATTCCTCATTCTAGGATCCTAGGAGTGGAATTTTCCATTTTCTAATATACTAAGCCTTACAGCTATCTTA
GATGCGATCTGACTCCTGTGTGACTGTGGAGCACCCAGGGACGTGGTTTTAGAGTCTACCTAATATGTTA
AGGACAAGGAAACCTCTGAGTCTACCTAATATGTTAAGGACAAGGAAACCTCTGGACAGTGGTATATTGG
GGAATTTTTTTTTTTTTTTTGAGACGGAGTCTGGCTCTGTCACCCAGGCTAGAGTGCAATGGCACGATCT
CGGCTCACTGCAAGCTCTGCGTCCTGGGTTGACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGAC
TACAGGAGCTCGCCACCACACCCAGCTAATTTTTTTTTTTTTTTTTTTATTTGAGACGGAGTTTCGCTCT
GTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGACTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCAT
TCTCCTGCCTCAGCCTCCCGTGTAGCTGGGACTACAGGCACGCGCCACCATGCCCGGCTAATTTTTGTAT
TTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTGGTGATCCACCCA
CCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCAGGGGGAATGTTCTATAA
CCAGCTCTGTAAAGGAAAAGCACTGATGTGTGGTAGTCACCAATTTCTGTGGTGTAAATACTCCCACCAT
GGTTGATTTCAAGCCACCAGTGGTTTAATAACCAGCTCATAAATCTCCTAAATATTTTACAGTTGACTCT
CATGAGCTGATTGGAGTCAGCTGGAACATACCACTGCCTCTAGACTAAGGTCAGCAGATTTAGCAAATAC
AGACTGCCCCAGTTCATTGAATTTTAGATAAATGAAATAAATCTATAAGGTTAAGTATGTCCCCAGAACT
GCATGGAACATGCTTAATCTAAACAATGATTTGTTGTTCACCTGAAATTCAAATTTAGCTGGGTGTCCTG
TATTTCATCTGGCAACCCTACTTCAGACCCAGGTGTAAGGTACATGGATGTGCTTTGGTCAAGGAATAGG
CCAAGGCAGAGATCCATGCCTGCATGACTCAGTGGGTTTGGTGCACAGGCACACACCTCCACTTGTTATA
TAACCTGTTTGTGTAAGTTCATACTTGGTCTGAGCCACTGTTGTCTGTAAAAGGTAATTGTCCTGCTAAT
GCTGTACAGGGGCTCTTGGGGTTCGGCTCAGCTCAACATGGCTTGACATGGTGGGCACACTGGCGCCCAG
TAAGAGAGAGAGAGAGCCAAAGCTGTCCGTTTTGCAGATGGACAGGAAGGAGCCAGGACACAGCTCAGCT
TGCTCACGCCCAGAGAGAGAAAAAGTTAAGCTGCTGACCCTGAAGGCAAGGGAGAGCAGGCTGCACAGCT
GTGTGTGGAAGCCACGGGCTCAAGCAGCCAAGGCAGGGCGGACAGTGTGAGAGAGCTAGTGTAAGCTGTT
GATGAGAGCTGTTGCTGAATAAAACCATATTCACCTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

INMT

"Nothing is true, everything is permitted." ~ hassan i sabbah
"Experiments are the only means of attaining knowledge at our disposal. The rest is poetry, imagination." -Max Planck
 

Good quality Syrian rue (Peganum harmala) for an incredible price!
 
stevowitz
#2 Posted : 4/20/2010 7:08:23 AM

The Dude


Posts: 481
Joined: 23-Feb-2010
Last visit: 12-Jun-2017
Location: ♑
that's pretty awesome looking data. wish I could make sense from it.

what does this mean in your line of work? is this new research/data?
*We are now at a phase of human development where we have accumulated an enormous amount of knowledge through scientific research in the material world. This is very important knowledge, but it must be integrated. -Hoffman
*A young man who wishes to remain a sound Atheist cannot be too careful of his reading -C.S. Lewis
cephalopods are enlightened -benzyme
T R I P S I T
 
ms_manic_minxx
#3 Posted : 4/20/2010 7:37:03 AM

DMT-Nexus member

Moderator

Posts: 1538
Joined: 24-Nov-2009
Last visit: 03-Dec-2021
Benzy, more importantly, can you tell what's going on simply by looking at a huge chunk of text like that? Smile

And can you please decant... I mean... elaborate further?
Some things will come easy, some will be a test
 
benzyme
#4 Posted : 4/22/2010 4:07:46 AM

analytical chemist

Moderator | Skills: Analytical equipment, Chemical master expertExtreme Chemical expert | Skills: Analytical equipment, Chemical master expertChemical expert | Skills: Analytical equipment, Chemical master expertSenior Member | Skills: Analytical equipment, Chemical master expert

Posts: 7463
Joined: 21-May-2008
Last visit: 03-Mar-2024
Location: the lab
it's not new data, but it is well referenced.
the protein sequence can be compared to other sequences in other organisms, this is called homology.

the mRNA sequence is basically the coding for the gene of INMT expression.
"Nothing is true, everything is permitted." ~ hassan i sabbah
"Experiments are the only means of attaining knowledge at our disposal. The rest is poetry, imagination." -Max Planck
 
--Shadow
#5 Posted : 5/14/2014 11:57:16 AM

DMT-Nexus member


Posts: 463
Joined: 21-Dec-2013
Last visit: 28-Dec-2019
Noncompetitive Inhibition of Indolethylamine-N-methyltransferase by N,N-Dimethyltryptamine and N,N-Dimethylaminopropyltryptamine.

Abstract:
Indolethylamine-N-methyltransferase (INMT) is a Class 1 transmethylation enzyme known for its production of N,N-dimethyltryptamine (DMT), a hallucinogen with affinity for various serotonergic, adrenergic, histaminergic, dopaminergic, and sigma-1 receptors.

DMT is produced via the action of INMT on the endogenous substrates tryptamine and S-adenosyl-l-methionine (SAM). The biological, biochemical, and selective small molecule regulation of INMT enzyme activity remain largely unknown.

Kinetic mechanisms for inhibition of rabbit lung INMT (rabINMT) by the product, DMT, and by a new novel tryptamine derivative were determined. After Michaelis-Menten and Lineweaver-Burk analyses had been applied to study inhibition, DMT was found to be a mixed competitive and noncompetitive inhibitor when measured against tryptamine.

The novel tryptamine derivative, N-[2-(1H-indol-3-yl)ethyl]-N',N'-dimethylpropane-1,3-diamine (propyl dimethyl amino tryptamine or PDAT), was shown to inhibit rabINMT by a pure noncompetitive mechanism when measured against tryptamine with a Ki of 84 μM. No inhibition by PDAT was observed at 2 mM when it was tested against structurally similar Class 1 methyltransferases, such as human phenylethanolamine-N-methyltransferase (hPNMT) and human nicotinamide-N-methyltransferase (hNNMT), indicating selectivity for INMT.

The demonstration of noncompetitive mechanisms for INMT inhibition implies the presence of an inhibitory allosteric site. In silico analyses using the computer modeling software Autodock and the rabINMT sequence threaded onto the human INMT (hINMT) structure (Protein Data Bank entry 2A14 ) identified an N-terminal helix-loop-helix non-active site binding region of the enzyme. The energies for binding of DMT and PDAT to this region of rabINMT, as determined by Autodock, were -6.34 and -7.58 kcal/mol, respectively. Assessment of the allosteric control of INMT may illuminate new biochemical pathway(s) underlying the biology of INMT

Department of Neuroscience, University of Wisconsin School of Medicine and Public Health , 1300 University Avenue, Madison, Wisconsin 53706, United States.
Throughout recorded time and long before, trees have stood as sentinels, wise yet silent, patiently accumulating their rings while the storms of history have raged around them --The living wisdom of trees, Fred Hageneder
 
Ufostrahlen
#6 Posted : 5/14/2014 2:48:39 PM

xͭ͆͝͏̮͔̜t̟̬̦̣̟͉͈̞̝ͣͫ͞,̡̼̭̘̙̜ͧ̆̀̔ͮ́ͯͯt̢̘̬͓͕̬́ͪ̽́s̢̜̠̬̘͖̠͕ͫ͗̾͋͒̃͛̚͞ͅ


Posts: 1716
Joined: 23-Apr-2012
Last visit: 23-Jan-2017
Here is the amino acid sequence for the human 5HT2A receptor, in case anyone needs it:

>sp|P28223|5HT2A_HUMAN 5-hydroxytryptamine receptor 2A OS=Homo sapiens GN=HTR2A PE=1 SV=2
MDILCEENTSLSSTTNSLMQLNDDTRLYSNDFNSGEANTSDAFNWTVDSENRTNLSCEGC
LSPSCLSLLHLQEKNWSALLTAVVIILTIAGNILVIMAVSLEKKLQNATNYFLMSLAIAD
MLLGFLVMPVSMLTILYGYRWPLPSKLCAVWIYLDVLFSTASIMHLCAISLDRYVAIQNP
IHHSRFNSRTKAFLKIIAVWTISVGISMPIPVFGLQDDSKVFKEGSCLLADDNFVLIGSF
VSFFIPLTIMVITYFLTIKSLQKEATLCVSDLGTRAKLASFSFLPQSSLSSEKLFQRSIH
REPGSYTGRRTMQSISNEQKACKVLGIVFFLFVVMWCPFFITNIMAVICKESCNEDVIGA
LLNVFVWIGYLSSAVNPLVYTLFNKTYRSAFSRYIQCQYKENKKPLQLILVNTIPALAYK
SSQLQMGQKKNSKQDAKTTDNDCSMVALGKQHSEEASKDNSDGVNEKVSCV

I even made a fancy picture with I-TASSER
Ufostrahlen attached the following image(s):
model1.gif (24kb) downloaded 47 time(s).
Internet Security: PsilocybeChild's Internet Security Walk-Through(1)(2)(3)(4)(5)(6)(7)(8)
Search the Nexus with disconnect.me (anonymous Google search) by adding "site:dmt-nexus.me" (w/o the ") to your search.
 
Nathanial.Dread
#7 Posted : 5/14/2014 7:04:26 PM

DMT-Nexus member


Posts: 2151
Joined: 23-Nov-2012
Last visit: 07-Mar-2017
Question: how hard is it to insert the genes for a specific metabolic pathway into an organism that doesn't naturally express them?

It appears to be just 3 metabolic steps from L-tryptophan to DMT, so that means that, in theory, at least, we just need to insert the codes for 3 different enzymes into the genetic sequence.

What if we could do that for some kind of fast-growing, easy-to-care-for fungus (think like wood-ear mushrooms, you can buy grow-kits at the Whole Foods)? If that were the case, it would be easy and cheap to manufacture large quantities of DMT in a sustainable matter.

If we could get the sequences for other pathways that produce substituted tryptamines, there could be a whole world opening up of custom fungi.

Blessings
~ND
"There are many paths up the same mountain."

 
 
Users browsing this forum
Guest

DMT-Nexus theme created by The Traveler
This page was generated in 0.022 seconds.